STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_1345Transcription initiation factor IIB-2. (208 aa)    
Predicted Functional Partners:
F751_4033
TATA-box-binding protein 2.
   
 0.995
F751_1971
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.991
F751_1174
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.991
F751_5393
General transcription factor IIF subunit 2.
    
 0.991
F751_2377
DNA-directed RNA polymerase II subunit RPB7.
   
 0.990
F751_1773
DNA-directed RNA polymerases II, IV and V subunit 3.
    
 0.990
F751_2800
Uncharacterized protein.
    
 0.990
F751_1253
DNA repair helicase XPB2.
    
 0.989
F751_4131
DNA-directed RNA polymerase II 16 kDa polypeptide.
    
 0.989
F751_3455
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.988
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.