STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_1973Pre-mRNA-splicing factor SYF1. (907 aa)    
Predicted Functional Partners:
F751_6001
Crooked neck-like protein 1.
   
0.999
F751_6782
U-box domain-containing protein 72.
   
 0.995
F751_6257
SNW domain-containing protein 1.
   
 0.995
F751_5336
Pre-mRNA-splicing factor ISY1-like protein.
    
 0.995
F751_0326
Peptidyl-prolyl cis-trans isomerase E.
   
 0.994
F751_6306
Intron-binding protein aquarius.
   
 0.994
F751_2215
Zinc finger CCCH domain-containing protein 4.
   
 0.993
F751_3367
Cell division cycle 5-like protein.
   
 
 0.981
F751_5569
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.976
F751_0593
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.975
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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