STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_1990Fibronectin type-III domain-containing protein 3a. (897 aa)    
Predicted Functional Partners:
F751_4917
Uncharacterized protein.
    
 0.921
F751_2304
Leucine-rich repeat-containing protein 1.
    
 0.840
F751_6249
Chromatin structure-remodeling complex subunit snf21.
    
 0.756
F751_5796
C2 NT-type domain-containing protein.
    
 0.673
F751_6360
Double-strand break repair protein MRE11.
    
 0.665
F751_0816
Amyloid beta A4 protein.
    
 0.641
F751_2642
Ubiquitin-60S ribosomal protein L40-2.
    
  0.616
F751_0444
Uncharacterized protein.
    
 0.600
F751_3997
Uncharacterized protein.
    
 0.600
F751_4432
Replication factor A protein 2.
    
 0.559
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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