STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_2471DNA cross-link repair 1 protein. (244 aa)    
Predicted Functional Partners:
F751_5457
Cleavage and polyadenylation specificity factor CPSF30.
    
 0.983
F751_1895
Fanconi anemia group M protein.
   
 0.850
F751_4562
Poly(A) polymerase.
    
 0.836
F751_1243
ATP-dependent DNA helicase 2 subunit KU80.
    
 0.815
F751_5132
Symplekin.
   
 0.787
F751_1983
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.660
F751_4594
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 0.660
F751_0449
ATP-dependent DNA helicase 2 subunit KU70.
   
 0.655
F751_0450
X-ray repair cross-complementing protein 6.
   
 0.655
F751_6275
Cleavage and polyadenylation specificity factor subunit 5.
   
 
 0.627
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.