Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F751_490330S ribosomal protein S20, chloroplastic. (181 aa)    
Predicted Functional Partners:
F751_3620
50S ribosomal protein L18.
   
 
 0.978
F751_5866
50S ribosomal protein L29.
   
 
 0.963
F751_5598
50S ribosomal protein L9.
   
 
 0.963
F751_1582
50S ribosomal protein L28.
   
 
 0.961
F751_4928
50S ribosomal protein L21, chloroplastic.
   
 
 0.958
F751_6377
50S ribosomal protein L13, chloroplastic; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.957
F751_2451
30S ribosomal protein S1, chloroplastic.
   
 
 0.955
Rps9
30S ribosomal protein S9, chloroplastic.
   
   0.943
F751_0089
50S ribosomal protein L31, chloroplastic.
   
   0.942
F751_3900
50S ribosomal protein L27.
   
 
 0.937
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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