Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F751_2672DNA polymerase theta. (154 aa)    
Predicted Functional Partners:
F751_2673
DNA polymerase theta.
 
     0.930
F751_1895
Fanconi anemia group M protein.
   
 
 0.801
F751_2082
Exonuclease 1.
  
 
 0.737
F751_1217
DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.
  
 
 0.652
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 
 0.636
F751_5820
Fanconi anemia group D2 protein.
   
 0.591
F751_3129
DNA ligase 4.
   
 
 0.518
F751_4343
DNA repair protein REV1.
   
 
 0.515
F751_3019
Protein DAMAGED DNA-BINDING 2.
    
 
 0.507
F751_6996
Endonuclease III.
     
 0.498
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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