Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F751_2690RTF2-like protein. (231 aa)    
Predicted Functional Partners:
F751_5219
SDE2-like protein.
      
 0.730
F751_4586
tRNA (guanine(26)-N(2))-dimethyltransferase.
    
   0.547
F751_2096
Formin-like protein; Belongs to the formin-like family.
      
 0.505
F751_3996
DDI1-like protein 2.
      
 0.470
F751_4246
RNA polymerase-associated protein RTF1-like protein.
      
 0.468
F751_0051
Tyrosine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.448
F751_1914
Tubby-like F-box protein 5; Belongs to the TUB family.
   
  
 0.430
F751_3862
WD40 repeat-containing protein SMU1.
      
 0.422
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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