Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
F751_2074Cyclin-T1-4; Belongs to the cyclin family. (292 aa)    
Predicted Functional Partners:
F751_3810
Cyclin-dependent kinase C-2.
    
 0.995
F751_4442
Cyclin-dependent kinase D-1.
     
 0.921
F751_4382
Cyclin-H1-1; Belongs to the cyclin family.
     
 0.905
F751_2924
Putative transcription elongation factor SPT5-like protein 1.
    
 0.903
F751_1811
Uncharacterized protein.
    
 0.903
F751_2452
Transcription elongation factor A protein 2.
    
 0.901
F751_1389
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.869
F751_1270
DNA-directed RNA polymerase II subunit RPB1.
    
 0.869
F751_5561
Cyclin-C.
     
 0.859
F751_1345
Transcription initiation factor IIB-2.
     
 0.850
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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