Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F751_2082Exonuclease 1. (651 aa)    
Predicted Functional Partners:
F751_6095
DNA mismatch repair protein Mlh1.
   
 0.990
F751_2623
DNA mismatch repair protein MSH2.
   
 0.990
F751_6360
Double-strand break repair protein MRE11.
   
 0.985
F751_3125
Mismatch repair endonuclease PMS2.
   
 0.984
F751_1896
DNA repair protein RAD50.
  
 0.983
F751_4656
Uncharacterized protein YrrC.
   
 0.980
F751_1217
DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.
  
 0.973
F751_3942
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
 0.972
F751_1243
ATP-dependent DNA helicase 2 subunit KU80.
    
 
 0.964
F751_6358
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.958
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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