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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_2088Putative tRNA-dihydrouridine synthase 2. (487 aa)    
Predicted Functional Partners:
F751_6093
tRNA (Guanine(10)-N2)-methyltransferase-like protein.
   
  
 0.479
F751_5927
Pantoate-beta-alanine ligase.
  
    0.473
F751_6973
tRNA/tmRNA (Uracil-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 0.443
F751_2273
tRNA pseudouridine synthase B.
  
  
 0.441
F751_0715
tRNA pseudouridine synthase.
  
 
 0.423
F751_6369
Nucleolar protein 14.
   
    0.410
F751_4586
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.405
F751_2333
tRNA pseudouridine synthase 1.
  
 
 0.402
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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