Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
F751_2103Transcription elongation regulator 1. (691 aa)    
Predicted Functional Partners:
F751_0323
Microfibrillar-associated protein 1.
   
 0.979
F751_6549
Pre-mRNA-splicing factor 38A.
   
 0.972
F751_0728
CWC15-like protein.
   
 0.963
F751_4150
Pre-mRNA-processing factor 17.
    
 0.949
F751_5099
Splicing factor 3A subunit 3.
   
 
 0.946
F751_2094
U2 small nuclear ribonucleoprotein A.
    
 
 0.939
F751_2215
Zinc finger CCCH domain-containing protein 4.
   
 0.936
F751_1586
Splicing factor 3B subunit 1.
   
 
 0.928
F751_6257
SNW domain-containing protein 1.
   
 0.926
F751_3367
Cell division cycle 5-like protein.
   
  0.918
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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