STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_5454Reticulocyte-binding protein 2-like protein a. (521 aa)    
Predicted Functional Partners:
F751_6249
Chromatin structure-remodeling complex subunit snf21.
   
 0.858
F751_4484
Ankyrin repeat, PH and SEC7 domain containing protein secG.
    
 0.611
F751_3396
Retinoblastoma-binding protein 5.
    
 0.543
F751_5651
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.532
F751_4864
Nuclear pore complex protein Nup98-Nup96.
    
 0.453
F751_0977
Serine/threonine-protein kinase ATG1.
    
 0.444
F751_2304
Leucine-rich repeat-containing protein 1.
    
 0.438
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
    
 0.434
F751_1459
SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.434
F751_2642
Ubiquitin-60S ribosomal protein L40-2.
    
 0.415
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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