STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_3719DNA damage-binding protein 1a. (1092 aa)    
Predicted Functional Partners:
F751_2615
Cullin-4; Belongs to the cullin family.
  
 0.996
F751_5996
DNA excision repair protein ERCC-8.
    
 0.992
F751_0491
Denticleless protein-like protein.
    
 0.989
F751_3019
Protein DAMAGED DNA-BINDING 2.
    
 0.984
F751_6626
E3 ubiquitin-protein ligase RBX1.
    
 0.981
F751_1217
DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.
    
 0.958
F751_5088
COP9 signalosome complex subunit 1.
    
 0.924
F751_5907
COP9 signalosome complex subunit 5b.
    
 0.917
F751_5885
COP9 signalosome complex subunit 3.
  
 
 0.876
F751_6154
Cullin-associated NEDD8-dissociated protein 1.
  
 0.875
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.