STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_00185Uncharacterized protein. (785 aa)    
Predicted Functional Partners:
Rsub_11845
Uncharacterized protein.
 
 0.992
Rsub_12714
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 0.964
Rsub_09654
Uncharacterized protein.
  
 0.959
Rsub_03967
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.954
Rsub_00952
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.943
Rsub_10773
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.943
Rsub_12700
Uncharacterized protein.
  
 0.943
Rsub_13321
Ig-like domain-containing protein.
  
 0.943
Rsub_02686
CoA carboxyltransferase N-terminal domain-containing protein.
 0.941
Rsub_05219
Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.939
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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