STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_00173Quinolinate, chloroplastic. (699 aa)    
Predicted Functional Partners:
Rsub_12702
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
     
 0.976
Rsub_12448
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
 
 0.962
Rsub_02394
HTH cro/C1-type domain-containing protein.
      
 0.865
Rsub_05883
Uncharacterized protein.
      
 0.695
Rsub_12030
Uncharacterized protein.
      
 0.695
Rsub_00976
Dynein heavy chain axonemal protein.
      
 0.605
Rsub_00154
Dynein heavy chain axonemal protein.
      
 0.605
Rsub_06719
Uncharacterized protein.
      
 0.605
Rsub_10920
Dynein heavy chain axonemal.
      
 0.605
Rsub_10834
Radial spoke.
    
 
 0.564
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.