STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_01400Uncharacterized protein. (552 aa)    
Predicted Functional Partners:
Rsub_08771
Ubiquitin-40S ribosomal protein S27a.
    
  0.516
Rsub_09717
Uncharacterized protein.
    
  0.516
Rsub_01544
Cullin; Belongs to the cullin family.
    
 0.492
Rsub_02895
Ubiquitin-conjugating enzyme E2 variant 1C.
     
 0.479
Rsub_03949
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.473
Rsub_02611
NEDD8-conjugating enzyme Ubc12; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.444
Rsub_05151
DNA repair protein.
    
 0.436
Rsub_06007
Double-strand break repair protein.
    
 0.417
Rsub_02125
ATP-dependent DNA helicase 2 subunit 1.
     
 0.408
Rsub_07575
FHA domain-containing protein.
    
  0.408
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.