Rsub_00984 protein (Raphidocelis subcapitata)

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gene neighborhood

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Score

Rsub_00984

Uncharacterized protein. (1016 aa)

Predicted Functional Partners:

LSM8

0.962

Rsub_05998

0.961

LSM5

0.956

Rsub_09300

0.956

LSM4

0.955

LSM3

0.954

Rsub_02868

0.947

Rsub_11626

0.783

Rsub_02176

0.685

Rsub_06159

0.685

Your Current Organism:

Raphidocelis subcapitata

NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A2V0NKE6	A0A2V0PFQ4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A2V0NKE6	A0A2V0NYN7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A2V0NKE6	A0A2V0P453	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	Rsub_00984	A0A2V0NKE6	A0A2V0NP26	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.954
LSM3	Rsub_02176	A0A2V0NKE6	A0A2V0NPU4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.931
LSM3	Rsub_02868	A0A2V0NKE6	A0A2V0NPY0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM3	Rsub_05998	A0A2V0NKE6	A0A2V0P066	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.999
LSM3	Rsub_06159	A0A2V0NKE6	A0A2V0P7T0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.	0.897
LSM3	Rsub_09300	A0A2V0NKE6	A0A2V0PHG6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated protein Sm.	0.999
LSM3	Rsub_11626	A0A2V0NKE6	A0A2V0PH82	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4 U6 small nuclear ribonucleoprotein.	0.966
LSM4	LSM3	A0A2V0PFQ4	A0A2V0NKE6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	LSM5	A0A2V0PFQ4	A0A2V0NYN7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM4	LSM8	A0A2V0PFQ4	A0A2V0P453	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	Rsub_00984	A0A2V0PFQ4	A0A2V0NP26	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.955
LSM4	Rsub_02176	A0A2V0PFQ4	A0A2V0NPU4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.898
LSM4	Rsub_02868	A0A2V0PFQ4	A0A2V0NPY0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	Rsub_05998	A0A2V0PFQ4	A0A2V0P066	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.999
LSM4	Rsub_06159	A0A2V0PFQ4	A0A2V0P7T0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.	0.898
LSM4	Rsub_09300	A0A2V0PFQ4	A0A2V0PHG6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated protein Sm.	0.999
LSM4	Rsub_11626	A0A2V0PFQ4	A0A2V0PH82	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4 U6 small nuclear ribonucleoprotein.	0.965