STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_02312MPN domain-containing protein. (248 aa)    
Predicted Functional Partners:
Rsub_01302
TPR_REGION domain-containing protein.
   
 0.969
Rsub_09319
ER membrane complex subunit 1.
    
 0.955
Rsub_07830
ER membrane complex subunit 3-like.
    
 
 0.937
Rsub_06032
ER membrane complex subunit 6.
   
 0.904
Rsub_03850
Uncharacterized protein.
    
 
 0.899
Rsub_13025
DUF2012 domain-containing protein.
    
 
 0.883
Rsub_07409
Uncharacterized protein.
    
 
 0.862
Rsub_12566
RRM domain-containing protein.
      
 0.692
Rsub_13011
ABC transmembrane type-1 domain-containing protein.
      
 0.692
Rsub_10933
Rhodanese domain-containing protein.
      
 0.563
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.