STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_037324-hydroxy-3-methylbut-2-enyl diphosphate reductase. (466 aa)    
Predicted Functional Partners:
Rsub_00071
Uncharacterized protein.
  
  
 0.985
Rsub_07396
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
    
 0.979
Rsub_02683
Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
   
 0.978
Rsub_05036
Uncharacterized protein.
  
 0.978
Rsub_06387
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
   
 0.965
Rsub_10077
Geranyl diphosphate synthase.
   
 0.961
Rsub_12406
Isopentenyl-diphosphate delta-isomerase.
     
 0.949
Rsub_07676
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.882
Rsub_12724
Hcy-binding domain-containing protein.
  
 
 0.882
Rsub_07908
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 
 0.852
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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