STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_02596Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (219 aa)    
Predicted Functional Partners:
Rsub_01144
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.998
Rsub_00910
WD_REPEATS_REGION domain-containing protein.
    
 0.997
Rsub_02067
Anaphase-promoting complex subunit 6.
    
 0.996
Rsub_01273
APC1_C domain-containing protein.
    
 0.995
Rsub_08449
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
   
 0.995
Rsub_10481
ANAPC5 domain-containing protein.
    
 0.995
Rsub_07916
Anaphase promoting complex subunit 11.
   
 0.990
Rsub_02455
Ubiquitin conjugation factor E4.
   
0.963
Rsub_07295
Uncharacterized protein.
   
0.963
Rsub_02950
Uncharacterized protein.
    
 0.955
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.