STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_01221Uncharacterized protein. (732 aa)    
Predicted Functional Partners:
Rsub_09234
Phosphoenolpyruvate carboxylase.
     
 0.936
Rsub_05202
Phosphoenolpyruvate carboxylase.
     
 0.934
Rsub_07967
Aspartate aminotransferase.
     
 0.929
Rsub_06539
Malate dehydrogenase.
   
 0.927
Rsub_11298
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.927
Rsub_07629
Uncharacterized protein; Belongs to the LDH/MDH superfamily.
   
 0.926
Rsub_09244
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 0.926
Rsub_03511
Pyruvate carboxylase.
     
 0.925
Rsub_06511
ATP-citrate synthase alpha chain.
     
 0.924
Rsub_00614
Enolase.
    
 0.923
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.