STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_04885Uncharacterized protein. (373 aa)    
Predicted Functional Partners:
Rsub_00263
CBM20 domain-containing protein.
   
  
 0.568
Rsub_06459
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.529
Rsub_07570
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
 
 0.503
Rsub_12059
tRNA (Guanine-N(7)-)-methyltransferase.
   
 
 0.503
Rsub_07142
WD_REPEATS_REGION domain-containing protein.
   
 
 0.502
Rsub_03148
C2H2-type domain-containing protein.
      
 0.487
Rsub_08516
Uncharacterized protein.
      
 0.485
Rsub_05124
Brix domain-containing protein.
   
    0.438
Rsub_11279
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
  
 0.427
Rsub_01748
RNA-binding protein-like.
   
    0.408
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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