STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_01897Omega-3 fatty acid desaturase. (419 aa)    
Predicted Functional Partners:
Rsub_02179
Isocitrate lyase.
   
 
 0.568
Rsub_05319
Isocitrate lyase.
   
 
 0.568
Rsub_06154
Plastid acyl-ACP desaturase.
      
 0.526
Rsub_00560
Nitrate reductase.
    
 0.521
Rsub_09059
Nitrate reductase.
    
 0.521
Rsub_07729
Uncharacterized protein.
    
 0.521
Rsub_08913
MGDG specific palmitate delta-7 desaturase; Belongs to the fatty acid desaturase type 1 family.
    
 0.494
Rsub_10848
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.423
Rsub_09600
Glycerol-3-phosphate acyltransferase, chloroplastic; Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. Belongs to the GPAT/DAPAT family.
   
 
 0.421
Rsub_07005
FA_desaturase domain-containing protein; Belongs to the fatty acid desaturase type 1 family.
    
 0.419
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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