STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_04451Uncharacterized protein. (677 aa)    
Predicted Functional Partners:
Rsub_00405
WD_REPEATS_REGION domain-containing protein.
   
 0.952
Rsub_11486
Pre-mRNA-splicing factor.
    
 0.946
Rsub_10115
Uncharacterized protein.
   
 
 0.911
Rsub_09821
Small nuclear ribonucleoprotein F-like.
    
 0.906
Rsub_00983
Pre-mRNA-processing-splicing factor-like.
   
 
 0.904
Rsub_07420
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.890
Rsub_02758
Uncharacterized protein.
    
 
 0.886
Rsub_05929
Uncharacterized protein.
   
 0.879
Rsub_01818
PWI domain-containing protein.
   
 0.878
Rsub_12084
Cir_N domain-containing protein.
   
 0.875
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.