STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_05258GDP-fucose synthetase. (318 aa)    
Predicted Functional Partners:
Rsub_02754
GDP-mannose 4,6-dehydratase.
 0.997
Rsub_07396
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
    
 0.805
Rsub_06749
Ribosomal S14 protein, mitochondrial.
   
  0.764
Rsub_11527
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
  0.764
Rsub_03377
UDP-glucose 6-dehydrogenase.
  
 0.740
Rsub_00343
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
  0.737
Rsub_08464
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
  0.737
Rsub_05102
40S ribosomal protein S10.
   
  0.736
Rsub_05847
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 0.732
Rsub_08453
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
  0.726
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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