Rsub_05266 protein (Raphidocelis subcapitata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rsub_05266

Uncharacterized protein. (269 aa)

Predicted Functional Partners:

Rsub_01093

0.923

Rsub_07396

0.734

Rsub_00482

0.604

Rsub_00997

0.503

Rsub_09989

0.491

Rsub_11073

0.484

Rsub_05162

0.474

Rsub_02003

0.470

Rsub_02486

0.467

Rsub_00560

0.463

Your Current Organism:

Raphidocelis subcapitata

NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rsub_00482	Rsub_05266	A0A2V0NKD6	A0A2V0NX24	FSH1 domain-containing protein.	Uncharacterized protein.	0.604
Rsub_00482	Rsub_07396	A0A2V0NKD6	A0A2V0P9X6	FSH1 domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.999
Rsub_00560	Rsub_02003	A0A2V0NKK5	A0A2V0NP76	Nitrate reductase.	Carnitine dehydratase.	0.484
Rsub_00560	Rsub_05266	A0A2V0NKK5	A0A2V0NX24	Nitrate reductase.	Uncharacterized protein.	0.463
Rsub_00560	Rsub_07396	A0A2V0NKK5	A0A2V0P9X6	Nitrate reductase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.590
Rsub_00997	Rsub_05266	A0A2V0NTX7	A0A2V0NX24	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.503
Rsub_01093	Rsub_05266	A0A2V0NLS4	A0A2V0NX24	Prostaglandin E synthase-like.	Uncharacterized protein.	0.923
Rsub_02003	Rsub_00560	A0A2V0NP76	A0A2V0NKK5	Carnitine dehydratase.	Nitrate reductase.	0.484
Rsub_02003	Rsub_05266	A0A2V0NP76	A0A2V0NX24	Carnitine dehydratase.	Uncharacterized protein.	0.470
Rsub_02486	Rsub_05266	A0A2V0NXR9	A0A2V0NX24	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.	Uncharacterized protein.	0.467
Rsub_02486	Rsub_07396	A0A2V0NXR9	A0A2V0P9X6	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.424
Rsub_05162	Rsub_05266	A0A2V0NY34	A0A2V0NX24	Xylulose kinase.	Uncharacterized protein.	0.474
Rsub_05162	Rsub_07396	A0A2V0NY34	A0A2V0P9X6	Xylulose kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.415
Rsub_05266	Rsub_00482	A0A2V0NX24	A0A2V0NKD6	Uncharacterized protein.	FSH1 domain-containing protein.	0.604
Rsub_05266	Rsub_00560	A0A2V0NX24	A0A2V0NKK5	Uncharacterized protein.	Nitrate reductase.	0.463
Rsub_05266	Rsub_00997	A0A2V0NX24	A0A2V0NTX7	Uncharacterized protein.	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	0.503
Rsub_05266	Rsub_01093	A0A2V0NX24	A0A2V0NLS4	Uncharacterized protein.	Prostaglandin E synthase-like.	0.923
Rsub_05266	Rsub_02003	A0A2V0NX24	A0A2V0NP76	Uncharacterized protein.	Carnitine dehydratase.	0.470
Rsub_05266	Rsub_02486	A0A2V0NX24	A0A2V0NXR9	Uncharacterized protein.	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.	0.467
Rsub_05266	Rsub_05162	A0A2V0NX24	A0A2V0NY34	Uncharacterized protein.	Xylulose kinase.	0.474