STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_04578M48 peptidase. (341 aa)    
Predicted Functional Partners:
Rsub_03996
Farnesyltransferase subunit beta.
     
 0.654
Rsub_11809
Farnesyltransferase geranylgeranyltransferase type-1 subunit alpha.
     
 0.645
Rsub_08401
Uncharacterized protein.
    
 0.593
Rsub_10259
Uncharacterized protein.
    
 0.593
Rsub_03910
Uncharacterized protein.
     
 0.585
Rsub_05042
ATP-dependent zinc metalloprotease, mitochondrial.
   
 
 0.528
Rsub_11012
ATP-dependent zinc metalloprotease.
   
 
 0.528
Rsub_03163
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
    
 
 0.525
Rsub_12882
GTP cyclohydrolase I.
  
  
 0.492
Rsub_13160
Mitochondrial inner membrane protease subunit 2.
      
 0.487
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.