STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_03235Uncharacterized protein. (705 aa)    
Predicted Functional Partners:
Rsub_08951
RING-type domain-containing protein.
    
 0.551
Rsub_07574
Uncharacterized protein; Belongs to the SKP1 family.
   
 0.504
Rsub_07930
Skp1 domain-containing protein.
   
 0.504
Rsub_01544
Cullin; Belongs to the cullin family.
    
 0.493
Rsub_03949
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.493
Rsub_08790
Transcription elongation factor B polypeptide; Belongs to the SKP1 family.
    
 0.419
Rsub_09235
TIP120 domain-containing protein.
    
 0.412
Rsub_08771
Ubiquitin-40S ribosomal protein S27a.
    
  0.405
Rsub_09717
Uncharacterized protein.
    
  0.405
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.