STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_02743Uncharacterized protein. (504 aa)    
Predicted Functional Partners:
Rsub_01224
Peptidase C50 domain-containing protein.
   
 
 0.648
Rsub_02123
BUB1 N-terminal domain-containing protein.
   
 
 0.580
Rsub_04895
WD_REPEATS_REGION domain-containing protein.
   
 
 0.558
Rsub_12197
Cell division cycle 20.
   
 
 0.558
Rsub_07853
Uncharacterized protein.
   
  
 0.533
Rsub_02196
Uncharacterized protein.
   
  
 0.508
Rsub_03892
Protein kinase domain-containing protein.
   
 
  0.505
Rsub_02177
Uncharacterized protein.
   
  
 0.494
Rsub_02098
Serine threonine kinase family.
   
  
 0.485
Rsub_12780
HORMA domain-containing protein.
   
 
  0.473
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.