STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_0375850S ribosomal protein L4. (394 aa)    
Predicted Functional Partners:
Rsub_05847
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
  
 0.989
Rsub_06749
Ribosomal S14 protein, mitochondrial.
  
 0.989
Rsub_11527
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.984
Rsub_11865
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.984
Rsub_11604
S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
 0.983
Rsub_04288
30S ribosomal protein S11.
  
 0.982
Rsub_06047
60S ribosomal protein L5.
  
 0.982
Rsub_00343
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.980
Rsub_04572
50S ribosomal protein, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
  
 0.980
Rsub_04250
60S ribosomal protein L32-like.
  
 0.980
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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