STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_03106UmuC domain-containing protein. (772 aa)    
Predicted Functional Partners:
Rsub_10783
DNA repair protein.
   
0.929
Rsub_07047
HORMA domain-containing protein.
   
 0.877
Rsub_03083
DNA polymerase zeta.
   
 0.860
Rsub_02577
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.839
Rsub_06593
Proliferating cell nuclear.
   
 0.839
Rsub_08771
Ubiquitin-40S ribosomal protein S27a.
    
  0.727
Rsub_09717
Uncharacterized protein.
    
  0.727
Rsub_04060
Uncharacterized protein.
    
 
 0.671
Rsub_06855
Replication factor C subunit 2.
   
 
 0.648
Rsub_04878
DNA polymerase delta small subunit.
   
 0.644
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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