STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_04945Uncharacterized protein. (278 aa)    
Predicted Functional Partners:
Rsub_13344
MFAP1 domain-containing protein.
   
 0.846
Rsub_10825
Pre-mRNA-splicing factor.
   
 0.831
Rsub_06793
U1-type domain-containing protein.
    
  0.811
Rsub_01946
P-loop containing nucleoside triphosphate hydrolase.
   
  0.778
Rsub_01818
PWI domain-containing protein.
   
 0.758
Rsub_10115
Uncharacterized protein.
   
  0.686
Rsub_02690
Splicing factor 3B subunit 1.
   
 
 0.683
Rsub_02369
Uncharacterized protein.
   
 
  0.682
Rsub_07314
SKIP_SNW domain-containing protein.
   
 0.673
Rsub_08601
Splicing factor 3A subunit 3.
   
   0.670
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.