STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_0728430S ribosomal protein S16. (126 aa)    
Predicted Functional Partners:
Rsub_00358
30S ribosomal protein S9.
  
 0.996
Rsub_03392
30S ribosomal protein S6.
   
 0.996
Rsub_06749
Ribosomal S14 protein, mitochondrial.
   
 0.996
Rsub_04288
30S ribosomal protein S11.
  
 0.992
Rsub_01331
50S ribosomal protein L27.
  
 
 0.991
Rsub_09824
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.991
Rsub_01882
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.990
Rsub_05847
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.990
Rsub_06659
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 0.990
Rsub_04367
30S ribosomal protein S12.
   
 0.990
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.