STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_04717Uncharacterized protein. (382 aa)    
Predicted Functional Partners:
Rsub_03657
Geranylgeranyl reductase.
  
 
 0.991
Rsub_05027
3,8-divinyl protochlorophyllide a 8-vinyl reductase.
  
 
 0.986
Rsub_06512
Chlorophyll(Ide) b reductase chloroplastic-like.
   
 0.982
Rsub_13385
Chlorophyllide a oxygenase.
   
 
 0.981
Rsub_08235
NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.
   
 0.972
Rsub_02674
Uncharacterized protein.
  
  
 0.968
Rsub_08278
Chlorophyll(Ide) b reductase chloroplastic; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.961
Rsub_06047
60S ribosomal protein L5.
  
 
 0.958
Rsub_05465
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
   
 
 0.955
Rsub_00724
Guanine nucleotide-binding protein-like.
   
 
 0.951
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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