STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_05399Bifunctional polynucleotide phosphatase kinase. (443 aa)    
Predicted Functional Partners:
Rsub_12694
Histidinol-phosphate aminotransferase.
  
 
 0.904
Rsub_00822
Imidazole glycerol phosphate synthase, chloroplastic; Belongs to the HisA/HisF family.
  
 
 0.888
Rsub_02739
DNA repair protein-like.
  
 
 0.831
Rsub_07554
Histidinol dehydrogenase, chloroplastic; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
 
 0.831
Rsub_10186
PRA-CH domain-containing protein.
  
 
 0.820
Rsub_02495
DNA ligase.
  
 0.769
Rsub_07215
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
  
 0.707
Rsub_06548
POLXc domain-containing protein.
    
 0.699
Rsub_10614
DNA ligase.
   
 0.692
Rsub_02754
GDP-mannose 4,6-dehydratase.
    
 0.682
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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