Rsub_07983 protein (Raphidocelis subcapitata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rsub_07983

DUF1619 domain-containing protein. (607 aa)

Predicted Functional Partners:

Rsub_02434

0.772

Rsub_07937

0.759

Rsub_01030

0.697

Rsub_06131

0.691

Rsub_03148

0.678

Rsub_12843

0.636

Rsub_10240

0.636

Rsub_07216

0.624

Rsub_02339

0.553

Rsub_03845

0.553

Your Current Organism:

Raphidocelis subcapitata

NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rsub_01030	Rsub_02339	A0A2V0NLL2	A0A2V0NPR0	Transmembrane protein.	Uncharacterized protein.	0.762
Rsub_01030	Rsub_02434	A0A2V0NLL2	A0A2V0NRN0	Transmembrane protein.	Uncharacterized protein.	0.954
Rsub_01030	Rsub_03845	A0A2V0NLL2	A0A2V0NZH2	Transmembrane protein.	Uncharacterized protein.	0.762
Rsub_01030	Rsub_06131	A0A2V0NLL2	A0A2V0P2I9	Transmembrane protein.	CC2D2AN-C2 domain-containing protein.	0.954
Rsub_01030	Rsub_07216	A0A2V0NLL2	A0A2V0P648	Transmembrane protein.	Ig-like domain-containing protein.	0.931
Rsub_01030	Rsub_07937	A0A2V0NLL2	A0A2V0P8F6	Transmembrane protein.	Meckelin.	0.966
Rsub_01030	Rsub_07983	A0A2V0NLL2	A0A2V0P4K1	Transmembrane protein.	DUF1619 domain-containing protein.	0.697
Rsub_02339	Rsub_01030	A0A2V0NPR0	A0A2V0NLL2	Uncharacterized protein.	Transmembrane protein.	0.762
Rsub_02339	Rsub_02434	A0A2V0NPR0	A0A2V0NRN0	Uncharacterized protein.	Uncharacterized protein.	0.955
Rsub_02339	Rsub_06131	A0A2V0NPR0	A0A2V0P2I9	Uncharacterized protein.	CC2D2AN-C2 domain-containing protein.	0.809
Rsub_02339	Rsub_07216	A0A2V0NPR0	A0A2V0P648	Uncharacterized protein.	Ig-like domain-containing protein.	0.801
Rsub_02339	Rsub_07937	A0A2V0NPR0	A0A2V0P8F6	Uncharacterized protein.	Meckelin.	0.765
Rsub_02339	Rsub_07983	A0A2V0NPR0	A0A2V0P4K1	Uncharacterized protein.	DUF1619 domain-containing protein.	0.553
Rsub_02434	Rsub_01030	A0A2V0NRN0	A0A2V0NLL2	Uncharacterized protein.	Transmembrane protein.	0.954
Rsub_02434	Rsub_02339	A0A2V0NRN0	A0A2V0NPR0	Uncharacterized protein.	Uncharacterized protein.	0.955
Rsub_02434	Rsub_03845	A0A2V0NRN0	A0A2V0NZH2	Uncharacterized protein.	Uncharacterized protein.	0.960
Rsub_02434	Rsub_06131	A0A2V0NRN0	A0A2V0P2I9	Uncharacterized protein.	CC2D2AN-C2 domain-containing protein.	0.963
Rsub_02434	Rsub_07216	A0A2V0NRN0	A0A2V0P648	Uncharacterized protein.	Ig-like domain-containing protein.	0.953
Rsub_02434	Rsub_07937	A0A2V0NRN0	A0A2V0P8F6	Uncharacterized protein.	Meckelin.	0.967
Rsub_02434	Rsub_07983	A0A2V0NRN0	A0A2V0P4K1	Uncharacterized protein.	DUF1619 domain-containing protein.	0.772