STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_05412DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (817 aa)    
Predicted Functional Partners:
Rsub_11409
DNA topoisomerase-like.
   
 
 0.810
Rsub_07396
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
  
 0.782
Rsub_00735
Structural maintenance of chromosomes protein.
   
 
 0.672
Rsub_11718
SMC_N domain-containing protein.
   
 
 0.672
Rsub_03400
DNA gyrase subunit A.
 
 
 0.640
Rsub_09038
SUMO-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.638
Rsub_07524
SUMO-conjugating enzyme-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.638
Rsub_02455
Ubiquitin conjugation factor E4.
   
 0.627
Rsub_07295
Uncharacterized protein.
   
 0.627
Rsub_01269
Condensin complex subunit 2.
   
 
 0.616
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.