STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_06851Uncharacterized protein. (917 aa)    
Predicted Functional Partners:
Rsub_04133
Uncharacterized protein.
   
 0.991
Rsub_08001
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.848
Rsub_03487
Uncharacterized protein.
    
 0.838
Rsub_11505
PIH1_CS domain-containing protein.
    
 0.808
Rsub_02593
RRM domain-containing protein.
    
 0.786
Rsub_00627
Nuclear cap-binding subunit 1.
    
 0.779
Rsub_09058
Hydroxylamine reductase.
    
 0.772
Rsub_12289
Smg4_UPF3 domain-containing protein.
    
 0.772
Rsub_12086
Hydroxylamine reductase.
    
 0.772
Rsub_06780
Nuclear cap-binding protein subunit 2.
    
 0.759
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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