STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_05201DUF1681 domain-containing protein. (277 aa)    
Predicted Functional Partners:
Rsub_09565
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.784
Rsub_04810
Rhodanese domain-containing protein.
    
 0.727
Rsub_04801
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.727
Rsub_12438
Rhodanese domain-containing protein.
    
 0.727
Rsub_01101
Uncharacterized protein.
    
 0.700
Rsub_02517
AP-1 complex subunit gamma.
  
 
 0.686
Rsub_10564
AP-2 complex subunit alpha-like.
    
 0.673
Rsub_12156
AP-2 complex subunit alpha-like.
    
 0.673
Rsub_04659
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.640
Rsub_11519
Clathrin heavy chain-like.
     
 0.640
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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