STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_07796ABC transporter domain-containing protein. (527 aa)    
Predicted Functional Partners:
Rsub_01882
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.586
Rsub_01861
Uncharacterized protein.
   
 
 0.570
Rsub_01862
Uncharacterized protein.
   
 
 0.570
Rsub_01331
50S ribosomal protein L27.
   
 
 0.567
Rsub_02781
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.564
Rsub_11865
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.563
Rsub_06047
60S ribosomal protein L5.
   
   0.560
Rsub_11527
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.551
Rsub_05847
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.541
Rsub_06749
Ribosomal S14 protein, mitochondrial.
   
   0.541
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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