STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_06656Uncharacterized protein. (551 aa)    
Predicted Functional Partners:
Rsub_07224
Small GTPase.
    
 0.738
Rsub_12555
Uncharacterized protein.
    
 0.738
Rsub_01561
Vacuolar sorting-associated protein.
    
 
 0.586
Rsub_01423
Translation initiation factor eIF-2B subunit beta; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.517
Rsub_03318
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.492
Rsub_12688
26S proteasome non-ATPase regulatory subunit.
    
  0.458
Rsub_08576
Rab-GAP TBC domain-containing protein.
   
  0.446
Rsub_04659
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
  0.429
Rsub_00833
26S protease regulatory subunit 8-like protein; Belongs to the AAA ATPase family.
    
  0.419
Rsub_13365
26S proteasome regulatory subunit-like; Belongs to the AAA ATPase family.
    
  0.419
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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