Rsub_05646 protein (Raphidocelis subcapitata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rsub_05646

AB hydrolase-1 domain-containing protein. (555 aa)

Predicted Functional Partners:

Rsub_02385

0.887

Rsub_02348

0.839

Rsub_07166

0.839

Rsub_05207

0.839

Rsub_05549

0.839

Rsub_10354

0.839

Rsub_01919

0.829

Rsub_05111

0.824

Rsub_04158

0.799

Rsub_08412

0.753

Your Current Organism:

Raphidocelis subcapitata

NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rsub_01919	Rsub_02385	A0A2V0NRD3	A0A2V0NSH5	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.669
Rsub_01919	Rsub_04158	A0A2V0NRD3	A0A2V0NUV0	Ribosomal_L5_C domain-containing protein.	4-hydroxythreonine-4-phosphate dehydrogenase.	0.413
Rsub_01919	Rsub_05111	A0A2V0NRD3	A0A2V0P1E1	Ribosomal_L5_C domain-containing protein.	Delta-1-pyrroline-5-carboxylate synthase A.	0.643
Rsub_01919	Rsub_05646	A0A2V0NRD3	A0A2V0P7H1	Ribosomal_L5_C domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.829
Rsub_02348	Rsub_02385	A0A2V0NVN6	A0A2V0NSH5	D-lactate dehydrogenase.	Uncharacterized protein.	0.686
Rsub_02348	Rsub_04158	A0A2V0NVN6	A0A2V0NUV0	D-lactate dehydrogenase.	4-hydroxythreonine-4-phosphate dehydrogenase.	0.413
Rsub_02348	Rsub_05111	A0A2V0NVN6	A0A2V0P1E1	D-lactate dehydrogenase.	Delta-1-pyrroline-5-carboxylate synthase A.	0.644
Rsub_02348	Rsub_05646	A0A2V0NVN6	A0A2V0P7H1	D-lactate dehydrogenase.	AB hydrolase-1 domain-containing protein.	0.839
Rsub_02385	Rsub_01919	A0A2V0NSH5	A0A2V0NRD3	Uncharacterized protein.	Ribosomal_L5_C domain-containing protein.	0.669
Rsub_02385	Rsub_02348	A0A2V0NSH5	A0A2V0NVN6	Uncharacterized protein.	D-lactate dehydrogenase.	0.686
Rsub_02385	Rsub_05111	A0A2V0NSH5	A0A2V0P1E1	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase A.	0.812
Rsub_02385	Rsub_05207	A0A2V0NSH5	A0A2V0P413	Uncharacterized protein.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.686
Rsub_02385	Rsub_05549	A0A2V0NSH5	A0A2V0P594	Uncharacterized protein.	D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.686
Rsub_02385	Rsub_05646	A0A2V0NSH5	A0A2V0P7H1	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.887
Rsub_02385	Rsub_07166	A0A2V0NSH5	A0A2V0P3L9	Uncharacterized protein.	3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.686
Rsub_02385	Rsub_08412	A0A2V0NSH5	A0A2V0PC46	Uncharacterized protein.	Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.	0.503
Rsub_02385	Rsub_10354	A0A2V0NSH5	A0A2V0PIN7	Uncharacterized protein.	D-3-phosphoglycerate dehydrogenase, chloroplastic-like.	0.686
Rsub_04158	Rsub_01919	A0A2V0NUV0	A0A2V0NRD3	4-hydroxythreonine-4-phosphate dehydrogenase.	Ribosomal_L5_C domain-containing protein.	0.413
Rsub_04158	Rsub_02348	A0A2V0NUV0	A0A2V0NVN6	4-hydroxythreonine-4-phosphate dehydrogenase.	D-lactate dehydrogenase.	0.413
Rsub_04158	Rsub_05207	A0A2V0NUV0	A0A2V0P413	4-hydroxythreonine-4-phosphate dehydrogenase.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.413