STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_08101Carboxymethylenebutenolidase. (189 aa)    
Predicted Functional Partners:
Rsub_00340
Bystin.
   
  0.498
Rsub_04047
Uncharacterized protein.
   
  0.498
Rsub_01748
RNA-binding protein-like.
   
  0.482
Rsub_06133
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.475
Rsub_10552
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.475
Rsub_03090
Uncharacterized protein.
   
  0.473
Rsub_02414
Eukaryotic translation initiation factor 2 subunit 3.
   
 0.472
Rsub_07376
Tocopherol cyclase.
   
 0.472
Rsub_08453
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
  0.469
Rsub_11984
Uncharacterized protein.
   
 0.468
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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