STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_08821BTB domain-containing protein. (783 aa)    
Predicted Functional Partners:
Rsub_01095
Uncharacterized protein.
    
   0.513
Rsub_00196
Uncharacterized protein.
  
     0.505
Rsub_03059
PHD-type domain-containing protein.
  
     0.499
Rsub_07326
Histidine-containing phosphotransfer-like.
  
     0.491
Rsub_05381
DNL-type domain-containing protein.
  
     0.482
Rsub_08867
Chaperone dnaJ.
  
     0.481
Rsub_07613
Uncharacterized protein.
  
     0.480
Rsub_08852
PsbP domain-containing protein.
  
     0.480
Rsub_00008
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
     0.476
Rsub_01797
Uncharacterized protein.
  
 
   0.474
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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