STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_09916JmjC domain-containing protein. (2747 aa)    
Predicted Functional Partners:
Rsub_11198
JmjC domain-containing protein.
   
 
 0.668
Rsub_00894
Histone H3.
    
 0.477
Rsub_01525
Histone.
    
 0.441
Rsub_01911
Histone H3.
    
 0.441
Rsub_03051
Histone H3; Belongs to the histone H3 family.
    
 0.441
Rsub_09543
Histone H3; Belongs to the histone H3 family.
    
 0.441
Rsub_09538
Histone H3; Belongs to the histone H3 family.
    
 0.441
Rsub_04848
Uncharacterized protein.
    
 0.407
Rsub_08768
Uncharacterized protein.
    
 0.407
Rsub_03621
DUF629 domain-containing protein.
   
  0.401
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.