STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_09011Peptidase M38. (484 aa)    
Predicted Functional Partners:
Rsub_09857
DHO_dh domain-containing protein.
  
 0.913
Rsub_05919
OMPdecase domain-containing protein.
  
 
 0.911
Rsub_13221
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.906
Rsub_07274
Uncharacterized protein.
  
 
 0.898
Rsub_00205
Carbamoyl-phosphate synthase large subunit, chloroplastic-like protein.
  
 0.831
Rsub_05868
Uncharacterized protein.
  
 0.831
Rsub_08793
Carbamoyl-phosphate synthase S chain.
  
 0.831
Rsub_12950
Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 0.831
Rsub_00560
Nitrate reductase.
  
 
 0.788
Rsub_09059
Nitrate reductase.
  
 
 0.788
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.