STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_09044MaoC-like domain-containing protein. (316 aa)    
Predicted Functional Partners:
Rsub_02179
Isocitrate lyase.
  
 
 0.977
Rsub_05319
Isocitrate lyase.
  
 
 0.977
Rsub_03285
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.819
Rsub_03967
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.808
Rsub_12561
TPR_REGION domain-containing protein.
   
 0.759
Rsub_09985
Uncharacterized protein.
  
 0.751
Rsub_02003
Carnitine dehydratase.
  
 
 0.750
Rsub_10773
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.735
Rsub_09050
Uncharacterized protein.
   
 0.732
Rsub_09069
Uncharacterized protein.
  
 0.711
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.