STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_07371ATP-dependent RNA helicase. (1683 aa)    
Predicted Functional Partners:
Rsub_09565
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.779
Rsub_04225
Ubiquitin-like domain-containing protein.
    
 0.766
Rsub_00405
WD_REPEATS_REGION domain-containing protein.
   
 0.738
Rsub_04810
Rhodanese domain-containing protein.
    
 0.712
Rsub_04801
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.712
Rsub_12438
Rhodanese domain-containing protein.
    
 0.712
Rsub_09978
Uncharacterized protein.
   
 0.693
Rsub_00579
Beta-adaptin A.
    
  0.680
Rsub_06373
50S ribosomal protein L27.
    
  0.680
Rsub_10814
Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
    
  0.680
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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