STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_08066Fatty acid amide hydrolase-like. (725 aa)    
Predicted Functional Partners:
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.949
Rsub_00666
Aspartyl-tRNA synthetase.
  
 0.773
Rsub_03009
Non-discriminatory gln-glu-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.669
Rsub_07440
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.655
Rsub_08244
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.655
Rsub_12999
Glutamine amidotransferase type-1 domain-containing protein.
  
 
 0.620
Rsub_00205
Carbamoyl-phosphate synthase large subunit, chloroplastic-like protein.
   
 
  0.615
Rsub_05868
Uncharacterized protein.
   
 
  0.615
Rsub_08793
Carbamoyl-phosphate synthase S chain.
   
 
  0.615
Rsub_12950
Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
   
 
  0.615
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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