STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_10688Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (156 aa)    
Predicted Functional Partners:
Rsub_04060
Uncharacterized protein.
    
 0.995
Rsub_05700
Uncharacterized protein.
    
 0.994
Rsub_13035
Ubiquitin-activating enzyme E1.
   
 0.966
Rsub_13147
Ubiquitin-activating enzyme E1.
   
 0.966
Rsub_02895
Ubiquitin-conjugating enzyme E2 variant 1C.
   
 0.963
Rsub_02455
Ubiquitin conjugation factor E4.
   
0.947
Rsub_07295
Uncharacterized protein.
   
0.947
Rsub_08771
Ubiquitin-40S ribosomal protein S27a.
    
 0.938
Rsub_09717
Uncharacterized protein.
    
 0.938
Rsub_03849
Ubiquitin-like modifier-activating enzyme.
  
 0.917
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.